EUKARYOTE LOSSES. “Even more striking conclusions were reached by the reconstruction of the evolution of the eukaryotic protein domain repertoire that involved comparison of 114 genomes. The results of this reconstruction indicate that most of the major eukaryotic lineages have experienced a net loss of domains that have been traced to the LECA.” (LECA = last eukaryotic common ancestor).
http://onlinelibrary.wiley.com/doi/10.1002/bies.201300037/full